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ARGI1_RAT_4_321

Arginase-1 [Arginase family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ARGI1_RAT):R: Substrate binding (126, 128, 130)
R: Substrate binding (137, 139)
19, 101, 124, 135, 136, 141, 142, 181, 183, 186, 232, 234, 246, 277
19, 101, 124, 126, 128, 130, 135:137, 139, 141, 142, 181, 183, 186, 232, 234, 246, 277
Metals (Me):Mn

Full PDB list

1d3v, 1hq5, 1hqf, 1hqg, 1hqh, 1hqx, 1p8m, 1p8n, 1p8o, 1p8p, 1p8q, 1p8r, 1p8s, 1r1o, 1rla, 1t4p, 1t4r, 1t4s, 1t4t, 1t5f, 1t5g, 1ta1, 1tbh, 1tbj, 1tbl, 1zpe, 1zpg, 2rla, 3e8q, 3e8z, 3e9b, 3rla, 4rla, 5rla (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 Me
H
1
0
1
D
1
2
4
H
1
2
6
D
1
2
8
N
1
3
0
T
1
3
5
S
1
3
7
N
1
3
9
H
1
4
1
G
1
4
2
D
1
8
3
E
1
8
6
D
2
3
2
D
2
3
4
T
2
4
6
E
2
7
7
[1]1d3v.a abh13 . . . . . . . . . . . . . . . . Mn
[1]1hq5.a s2c13 . . . . . . . . . . . . . . . . Mn
[1]1hqf.a har13 . . . . . . . . . . . . . . . . Mn
[1]1hqg.a orn9 . . . . . . . . * . . . . . . . Mn
[1]1hqh.a nnh12 . . . . . . . . . . . . . . . . Mn
[1]1p8m.b none . . . E . . . . . . . . . . . . Mn
[1]1p8n.a none . . . . . . . . . . . . A . . . Mn
[1]1p8o.a none . . . N . . . . . . . . . . . . Mn
[1]1p8p.c none N . . . . . . . . . . . . . . . Mn
[1]1p8q.a none . . . . . . . . . . . . . E . . Mn
[1]1p8r.a s2c13 E . . . . . . . . . . . . . . . Mn
[1]1p8s.b none . . . . . . . . . . . . C . . . Mn
[1]1r1o.a sdc13 . . . . . . . . . . . . . . . . Mn
[1]1rla.a none . . . . . . . . . . . . . . . . Mn
[1]1t4p.a 2bh13 . . . . . . . . . . . . . . . . Mn
[1]1t4r.c ahi9 . . . . . . . . . . . . . . . . Mn
[1]1t4s.a V8 . . . . . . . . . . . . . . . . Mn
[1]1t4t.a dir11 . . . . . . . . . . . . . . . . Mn
[1]1t5f.b dhh12 . . . . . . . . A . . . . . . . Mn
[1]1t5g.a R12 . . . . . . . . A . . . . . . . Mn
[1]1ta1.a none . . . . . . . . C . . . . . . . Mn
[1]1tbh.a none . . . . . . . . D . . . . . . . Mn
[1]1tbj.a none . . . . . . . . A . . . . . . . Mn
[1]1tbl.a none . . . . . . . . N . . . . . . . Mn
[1]1zpe.a none . . . . . . . . A . . . . . . . Mn
[1]1zpg.a none . . . . . . . . A . . . . . . . Mn
[1]3e8q.a none . . . . . A . . . . . . . . . . Mn
[1]3e8z.b none . . . . A . . . . . . . . . . . Mn
[1]3e9b.a s2c13 . . . . . A . . . . . . . . . . Mn

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 Me
Q
1
9
H
1
0
1
D
1
2
4
H
1
2
6
D
1
2
8
N
1
3
0
T
1
3
5
S
1
3
6
S
1
3
7
N
1
3
9
H
1
4
1
G
1
4
2
D
1
8
1
D
1
8
3
E
1
8
6
D
2
3
2
D
2
3
4
T
2
4
6
E
2
7
7
[1]1d3v.a . . . . . . . . . . . . . . . . . . . Mn
[1]1hq5.a . . . . . . . . . . . . . . . . . . . Mn
[1]1hqf.a . . . . . . . . . . . . . . . . . . . Mn
[1]1hqg.a . . . . . . . . . . * . . . . . . . . Mn
[1]1hqh.a . . . . . . . . . . . . . . . . . . . Mn
[1]1p8m.b . . . . E . . . . . * . . . . . . . . Mn
[1]1p8n.a . . . . . . . . . . . . . . . A . . . Mn
[1]1p8o.a . . . . N . . . . . * . . . . . . . . Mn
[1]1p8p.c . N . . . . . . . . * . . . . . . . . Mn
[1]1p8q.a . . . . . . . . . . . . . . . . E . . Mn
[1]1p8r.a . E . . . . . . . . . . . . . . . . . Mn
[1]1p8s.b . . . . . . . . . . * . . . . C . . . Mn
[1]1r1o.a . . . . . . . . . . . . . . . . . . . Mn
[1]1rla.a . . . . . . . . . . * . . . . . . . . Mn
[1]1t4p.a . . . . . . . . . . . . . . . . . . . Mn
[1]1t4r.c . . . . . . . . . . . . . . . . . . . Mn
[1]1t4s.a . . . . . . . . . . . . . . . . . . . Mn
[1]1t4t.a . . . . . . . . . . . . . . . . . . . Mn
[1]1t5f.b C . . . . . . . . . A . . . . . . . . Mn
[1]1t5g.a C . . . . . . . . . A . . . . . . . . Mn
[1]1ta1.a . . . . . . . . . . C . . . . . . . . Mn
[1]1tbh.a . . . . . . . . . . D . . . . . . . . Mn
[1]1tbj.a . . . . . . . . . . A . . . . . . . . Mn
[1]1tbl.a . . . . . . . . . . N . . . . . . . . Mn
[1]1zpe.a * . . . . . . . . . A . . . . . . . . Mn
[1]1zpg.a * . . . . . . . . . A . . . . . . . . Mn
[1]3e8q.a . . . . . . A . . . . . . . . . . . . Mn
[1]3e8z.b . . . . . A . . . . . . . . . . . . . Mn
[1]3e9b.a . . . . . . A . . . . . . . . . . . . Mn

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1d3v.a:abh
1hq5.a:s2c
1hqf.a:har
1hqg.a:orn
1hqh.a:nnh
1p8m.b is apo
1p8n.a is apo
1p8o.a is apo
1p8p.c is apo
1p8q.a is apo
1p8r.a:s2c
1p8s.b is apo
1r1o.a:sdc
1rla.a is apo
1t4p.a:2bh
1t4r.c:ahi
1t4s.a:V
1t4t.a:dir
1t5f.b:dhh
1t5g.a:R
1ta1.a is apo
1tbh.a is apo
1tbj.a is apo
1tbl.a is apo
1zpe.a is apo
1zpg.a is apo
3e8q.a is apo
3e8z.b is apo
3e9b.a:s2c
[1] 1d3v.a
0
0.1 0.5 0 0 - - - - - 0 - 0.5 - 0 0 0.1 0.1 0.2 0.7 - - - - - - - - 0.1
[1] 1hq5.a 0.1
0.2
0.2 0 0 - - - - - 0 - 0.5 - 0.1 0 0.1 0.1 0.2 0.7 - - - - - - - - 0
[1] 1hqf.a 0 0.2
0.3
0.1 0.1 - - - - - 0.2 - 0.9 - 0.2 0.1 0.1 0.6 0.3 0.6 - - - - - - - - 0.2
[1] 1hqg.a 0.6 0.5 0.7
0.1
0.5 - - - - - 0.3 - 0.3 - 0.7 0.2 1.1 0.3 0.5 0.5 - - - - - - - - 0.7
[1] 1hqh.a 0.1 0.3 0.7 0.1
0
- - - - - 0.1 - 0.6 - 0.2 0.1 0.1 0.7 0.3 1.0 - - - - - - - - 0.1
[1] 1p8m.b 0.1 0.1 0.8 0.1 0.1
-
- - - - 0.1 - 0.2 - 0.2 0 0.1 0 0.2 1.0 - - - - - - - - 0.2
[1] 1p8n.a 0 0.2 0.3 0 0.2 -
-
- - - 0.1 - 0.5 - 0.1 0.3 0 0.6 0.1 0.9 - - - - - - - - 0
[1] 1p8o.a 0 0.1 0.8 0.1 0.1 - -
-
- - 0 - 0.3 - 0.1 0 0.1 0 0.1 1.0 - - - - - - - - 0.2
[1] 1p8p.c 0.2 0.2 0.4 0 0 - - -
-
- 0.1 - 0.6 - 0.1 0.1 0.2 0.2 0.1 0.8 - - - - - - - - 0.2
[1] 1p8q.a 0.1 0.2 0.4 0 0 - - - -
-
0.2 - 0.7 - 0 0.1 0.1 0.2 0.3 0.9 - - - - - - - - 0.3
[1] 1p8r.a 0 0.1 0.4 0.1 0 - - - - -
0
- 0.5 - 0 0 0.1 0.2 0.3 0.9 - - - - - - - - 0.1
[1] 1p8s.b 0.3 0.3 0.5 0.1 0.2 - - - - - 0.2
-
0.5 - 0 0.2 0.2 0.3 0.3 1.0 - - - - - - - - 0.4
[1] 1r1o.a 0 0 0.2 0.1 0 - - - - - 0 -
0.2
- 0 0 0.1 0 0.2 0.6 - - - - - - - - 0.1
[1] 1rla.a 0.1 0.1 0.8 0.1 0 - - - - - 0.1 - 0.2
-
0.2 0.1 0.1 0.1 0.2 1.0 - - - - - - - - 0.4
[1] 1t4p.a 0 0.1 0.6 0.1 0 - - - - - 0 - 0.5 -
0.1
0 0.1 0.2 0.2 0.7 - - - - - - - - 0.1
[1] 1t4r.c 0 0.2 0.5 0.1 0.2 - - - - - 0.1 - 0.5 - 0
0.2
0.1 0.3 0.2 0.9 - - - - - - - - 0.1
[1] 1t4s.a 0 0.1 0.4 0.2 0.3 - - - - - 0.1 - 0.6 - 0.1 0.1
0
0.3 0.4 0.6 - - - - - - - - 0.3
[1] 1t4t.a 0 0.2 0.7 0 0.3 - - - - - 0.1 - 0.3 - 0.1 0.2 0.1
0.2
0.2 1.2 - - - - - - - - 0.2
[1] 1t5f.b 0 0 0.4 0.1 0 - - - - - 0 - 0.2 - 0 0 0.1 0.1
0.2
0.1 - - - - - - - - 0.2
[1] 1t5g.a 0 0.1 0.3 0.2 0.1 - - - - - 0 - 0.5 - 0.1 0 0.1 0.2 0.3
0.1
- - - - - - - - 0.3
[1] 1ta1.a 0 0 0.3 0 0 - - - - - 0 - 0.3 - 0 0.1 0.1 0.1 0.2 0.1
-
- - - - - - - 0.1
[1] 1tbh.a 0.2 0 0.3 0.1 0.1 - - - - - 0.1 - 0.3 - 0.2 0.1 0 0.1 0.2 0.3 -
-
- - - - - - 0.3
[1] 1tbj.a 0 0 0.4 0.1 0 - - - - - 0 - 0.2 - 0.1 0.1 0.1 0.1 0.2 0.1 - -
-
- - - - - 0.2
[1] 1tbl.a 0.2 0.2 0.6 0 0.1 - - - - - 0.3 - 0.6 - 0.2 0.2 0 0.3 0.3 0.5 - - -
-
- - - - 0.3
[1] 1zpe.a 0.1 0.1 0.4 0 0.1 - - - - - 0.1 - 0.6 - 0.2 0.2 0.5 0.2 0.3 0.1 - - - -
-
- - - 0.5
[1] 1zpg.a 0 0 0.3 0 0.1 - - - - - 0 - 0.3 - 0.1 0.1 0.1 0.1 0.1 0.1 - - - - -
-
- - 0.1
[1] 3e8q.a 0 0 0.3 0.1 0.1 - - - - - 0.1 - 0.3 - 0.1 0 0.1 0 0.1 0.6 - - - - - -
-
- 0.1
[1] 3e8z.b 0 0.1 0.4 0 0 - - - - - 0 - 0.2 - 0.1 0 0 0 0.1 0.6 - - - - - - -
-
0
[1] 3e9b.a 0 0.1 0.5 0 0 - - - - - 0 - 0.5 - 0 0 0.1 0.1 0.1 0.6 - - - - - - - -
0.1
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1d3v.a
1hq5.a
1hqf.a
1hqg.a
1hqh.a
1p8m.b
1p8n.a
1p8o.a
1p8p.c
1p8q.a
1p8r.a
1p8s.b
1r1o.a
1rla.a
1t4p.a
1t4r.c
1t4s.a
1t4t.a
1t5f.b
1t5g.a
1ta1.a
1tbh.a
1tbj.a
1tbl.a
1zpe.a
1zpg.a
3e8q.a
3e8z.b
3e9b.a
[1] 1d3v.a
0
.02 .07 .03 .04 .05 .09 .04 .03 .04 .01 .04 .04 .04 .01 .02 .03 .06 .05 .04 .04 .04 .05 .04 .07 .05 .04 .04 .01
[1] 1hq5.a .02
0
.06 .05 .06 .07 .08 .06 .03 .04 .03 .03 .04 .06 .03 .04 .04 .08 .07 .06 .06 .06 .07 .06 .09 .07 .04 .05 .03
[1] 1hqf.a .07 .06
0
.11 .07 .10 .07 .09 .06 .06 .08 .06 .07 .10 .07 .08 .07 .11 .09 .09 .09 .09 .09 .05 .11 .09 .08 .09 .06
[1] 1hqg.a .03 .05 .11
0
.04 .03 .07 .02 .05 .05 .02 .04 .05 .02 .04 .03 .06 .03 .06 .06 .05 .05 .06 .07 .08 .06 .05 .05 .04
[1] 1hqh.a .04 .06 .07 .04
0
.04 .06 .04 .04 .03 .03 .05 .06 .03 .03 .04 .07 .06 .08 .07 .08 .08 .08 .05 .11 .09 .07 .07 .05
[1] 1p8m.b .05 .07 .10 .03 .04
0
.06 .01 .05 .05 .04 .05 .04 .01 .04 .04 .07 .04 .06 .07 .07 .06 .06 .06 .09 .08 .05 .05 .06
[1] 1p8n.a .09 .08 .07 .07 .06 .06
0
.07 .07 .07 .08 .05 .07 .06 .09 .07 .09 .06 .11 .12 .11 .10 .11 .09 .14 .11 .07 .08 .09
[1] 1p8o.a .04 .06 .09 .02 .04 .01 .07
0
.05 .05 .03 .04 .05 .02 .04 .03 .06 .04 .06 .07 .06 .06 .06 .06 .09 .07 .06 .06 .05
[1] 1p8p.c .03 .03 .06 .05 .04 .05 .07 .05
0
.02 .03 .03 .03 .04 .02 .04 .06 .06 .07 .06 .07 .07 .07 .04 .09 .07 .04 .05 .03
[1] 1p8q.a .04 .04 .06 .05 .03 .05 .07 .05 .02
0
.03 .04 .04 .04 .03 .04 .07 .07 .08 .07 .08 .08 .08 .05 .09 .09 .05 .07 .05
[1] 1p8r.a .01 .03 .08 .02 .03 .04 .08 .03 .03 .03
0
.03 .05 .03 .02 .01 .04 .05 .06 .05 .05 .05 .06 .05 .08 .06 .05 .05 .02
[1] 1p8s.b .04 .03 .06 .04 .05 .05 .05 .04 .03 .04 .03
0
.06 .05 .05 .03 .05 .05 .09 .08 .08 .08 .09 .06 .11 .08 .06 .07 .04
[1] 1r1o.a .04 .04 .07 .05 .06 .04 .07 .05 .03 .04 .05 .06
0
.03 .03 .06 .06 .07 .04 .05 .05 .04 .04 .05 .07 .06 .01 .03 .04
[1] 1rla.a .04 .06 .10 .02 .03 .01 .06 .02 .04 .04 .03 .05 .03
0
.03 .04 .07 .04 .05 .06 .06 .05 .05 .06 .08 .07 .04 .04 .05
[1] 1t4p.a .01 .03 .07 .04 .03 .04 .09 .04 .02 .03 .02 .05 .03 .03
0
.03 .04 .06 .05 .04 .05 .05 .05 .03 .07 .06 .04 .04 .02
[1] 1t4r.c .02 .04 .08 .03 .04 .04 .07 .03 .04 .04 .01 .03 .06 .04 .03
0
.03 .04 .07 .06 .06 .06 .07 .05 .09 .07 .06 .06 .03
[1] 1t4s.a .03 .04 .07 .06 .07 .07 .09 .06 .06 .07 .04 .05 .06 .07 .04 .03
0
.06 .07 .06 .06 .05 .07 .04 .09 .07 .05 .05 .03
[1] 1t4t.a .06 .08 .11 .03 .06 .04 .06 .04 .06 .07 .05 .05 .07 .04 .06 .04 .06
0
.09 .08 .08 .08 .09 .07 .11 .08 .07 .06 .06
[1] 1t5f.b .05 .07 .09 .06 .08 .06 .11 .06 .07 .08 .06 .09 .04 .05 .05 .07 .07 .09
0
.02 .01 .02 0 .06 .04 .02 .05 .05 .05
[1] 1t5g.a .04 .06 .09 .06 .07 .07 .12 .07 .06 .07 .05 .08 .05 .06 .04 .06 .06 .08 .02
0
.01 .03 .02 .05 .03 .02 .05 .05 .04
[1] 1ta1.a .04 .06 .09 .05 .08 .07 .11 .06 .07 .08 .05 .08 .05 .06 .05 .06 .06 .08 .01 .01
0
.02 .01 .06 .03 .01 .05 .05 .04
[1] 1tbh.a .04 .06 .09 .05 .08 .06 .10 .06 .07 .08 .05 .08 .04 .05 .05 .06 .05 .08 .02 .03 .02
0
.02 .05 .05 .03 .03 .03 .04
[1] 1tbj.a .05 .07 .09 .06 .08 .06 .11 .06 .07 .08 .06 .09 .04 .05 .05 .07 .07 .09 0 .02 .01 .02
0
.06 .04 .02 .05 .05 .05
[1] 1tbl.a .04 .06 .05 .07 .05 .06 .09 .06 .04 .05 .05 .06 .05 .06 .03 .05 .04 .07 .06 .05 .06 .05 .06
0
.08 .06 .05 .04 .03
[1] 1zpe.a .07 .09 .11 .08 .11 .09 .14 .09 .09 .09 .08 .11 .07 .08 .07 .09 .09 .11 .04 .03 .03 .05 .04 .08
0
.03 .07 .07 .07
[1] 1zpg.a .05 .07 .09 .06 .09 .08 .11 .07 .07 .09 .06 .08 .06 .07 .06 .07 .07 .08 .02 .02 .01 .03 .02 .06 .03
0
.06 .05 .04
[1] 3e8q.a .04 .04 .08 .05 .07 .05 .07 .06 .04 .05 .05 .06 .01 .04 .04 .06 .05 .07 .05 .05 .05 .03 .05 .05 .07 .06
0
.02 .04
[1] 3e8z.b .04 .05 .09 .05 .07 .05 .08 .06 .05 .07 .05 .07 .03 .04 .04 .06 .05 .06 .05 .05 .05 .03 .05 .04 .07 .05 .02
0
.03
[1] 3e9b.a .01 .03 .06 .04 .05 .06 .09 .05 .03 .05 .02 .04 .04 .05 .02 .03 .03 .06 .05 .04 .04 .04 .05 .03 .07 .04 .04 .03
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1d3v.a
1hq5.a
1hqf.a
1hqg.a
1hqh.a
1p8m.b
1p8n.a
1p8o.a
1p8p.c
1p8q.a
1p8r.a
1p8s.b
1r1o.a
1rla.a
1t4p.a
1t4r.c
1t4s.a
1t4t.a
1t5f.b
1t5g.a
1ta1.a
1tbh.a
1tbj.a
1tbl.a
1zpe.a
1zpg.a
3e8q.a
3e8z.b
3e9b.a
[1] 1d3v.a
0
0.2 0.6 0.3 0.6 0.5 0.6 0.5 0.5 0.5 0.5 0.5 0.3 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.3 0.3 0.7 0.2 0.3
[1] 1hq5.a 0.2
0
0.6 0.3 0.6 0.5 0.6 0.5 0.5 0.5 0.4 0.5 0.3 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.3 0.3 0.7 0.3 0.3
[1] 1hqf.a 0.6 0.6
0
0.6 0.3 0.5 0.6 0.5 0.4 0.4 0.5 0.5 0.6 0.4 0.5 0.4 0.4 0.4 0.4 0.5 0.4 0.5 0.4 0.6 0.6 0.6 0.6 0.6 0.7
[1] 1hqg.a 0.3 0.3 0.6
0
0.6 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.3 0.4 0.5 0.5 0.5 0.5 0.4 0.5 0.4 0.5 0.4 0.6 0.1 0.2 0.7 0.3 0.4
[1] 1hqh.a 0.6 0.6 0.3 0.6
0
0.4 0.5 0.4 0.4 0.3 0.5 0.4 0.5 0.4 0.4 0.4 0.3 0.3 0.4 0.4 0.4 0.5 0.4 0.5 0.6 0.6 0.6 0.5 0.6
[1] 1p8m.b 0.5 0.5 0.5 0.5 0.4
0
0.4 0.1 0.2 0.2 0.3 0.3 0.4 0.1 0.2 0.2 0.3 0.2 0.1 0.2 0.2 0.3 0.2 0.4 0.5 0.4 0.6 0.5 0.6
[1] 1p8n.a 0.6 0.6 0.6 0.5 0.5 0.4
0
0.4 0.4 0.4 0.4 0.4 0.5 0.3 0.4 0.4 0.4 0.4 0.3 0.4 0.4 0.5 0.3 0.6 0.5 0.5 0.7 0.5 0.6
[1] 1p8o.a 0.5 0.5 0.5 0.5 0.4 0.1 0.4
0
0.2 0.2 0.3 0.3 0.4 0.2 0.2 0.2 0.2 0.2 0.2 0.3 0.3 0.4 0.2 0.4 0.5 0.5 0.6 0.5 0.6
[1] 1p8p.c 0.5 0.5 0.4 0.5 0.4 0.2 0.4 0.2
0
0.3 0.3 0.3 0.5 0.2 0.2 0.3 0.3 0.3 0.2 0.3 0.3 0.3 0.2 0.4 0.5 0.5 0.6 0.5 0.6
[1] 1p8q.a 0.5 0.5 0.4 0.5 0.3 0.2 0.4 0.2 0.3
0
0.3 0.3 0.5 0.2 0.2 0.2 0.3 0.3 0.2 0.3 0.3 0.4 0.2 0.4 0.5 0.5 0.6 0.5 0.5
[1] 1p8r.a 0.5 0.4 0.5 0.5 0.5 0.3 0.4 0.3 0.3 0.3
0
0.4 0.5 0.3 0.3 0.3 0.4 0.3 0.3 0.3 0.3 0.4 0.3 0.5 0.5 0.5 0.6 0.4 0.6
[1] 1p8s.b 0.5 0.5 0.5 0.5 0.4 0.3 0.4 0.3 0.3 0.3 0.4
0
0.5 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.3 0.4 0.3 0.5 0.5 0.5 0.6 0.5 0.6
[1] 1r1o.a 0.3 0.3 0.6 0.3 0.5 0.4 0.5 0.4 0.5 0.5 0.5 0.5
0
0.4 0.5 0.5 0.5 0.5 0.4 0.5 0.5 0.5 0.5 0.6 0.3 0.3 0.7 0.3 0.4
[1] 1rla.a 0.4 0.5 0.4 0.4 0.4 0.1 0.3 0.2 0.2 0.2 0.3 0.3 0.4
0
0.2 0.2 0.3 0.2 0.1 0.2 0.2 0.3 0.1 0.4 0.4 0.4 0.6 0.4 0.5
[1] 1t4p.a 0.5 0.5 0.5 0.5 0.4 0.2 0.4 0.2 0.2 0.2 0.3 0.3 0.5 0.2
0
0.2 0.2 0.2 0.2 0.3 0.2 0.4 0.2 0.4 0.5 0.5 0.6 0.4 0.5
[1] 1t4r.c 0.5 0.5 0.4 0.5 0.4 0.2 0.4 0.2 0.3 0.2 0.3 0.3 0.5 0.2 0.2
0
0.3 0.2 0.2 0.2 0.3 0.4 0.2 0.4 0.5 0.5 0.6 0.5 0.5
[1] 1t4s.a 0.5 0.5 0.4 0.5 0.3 0.3 0.4 0.2 0.3 0.3 0.4 0.3 0.5 0.3 0.2 0.3
0
0.3 0.3 0.3 0.3 0.4 0.2 0.4 0.5 0.5 0.6 0.4 0.5
[1] 1t4t.a 0.5 0.5 0.4 0.5 0.3 0.2 0.4 0.2 0.3 0.3 0.3 0.3 0.5 0.2 0.2 0.2 0.3
0
0.2 0.3 0.3 0.4 0.2 0.5 0.5 0.5 0.6 0.4 0.5
[1] 1t5f.b 0.5 0.5 0.4 0.4 0.4 0.1 0.3 0.2 0.2 0.2 0.3 0.3 0.4 0.1 0.2 0.2 0.3 0.2
0
0.2 0.2 0.3 0.1 0.4 0.4 0.4 0.6 0.4 0.5
[1] 1t5g.a 0.5 0.5 0.5 0.5 0.4 0.2 0.4 0.3 0.3 0.3 0.3 0.3 0.5 0.2 0.3 0.2 0.3 0.3 0.2
0
0.3 0.4 0.3 0.5 0.5 0.5 0.6 0.5 0.6
[1] 1ta1.a 0.5 0.5 0.4 0.4 0.4 0.2 0.4 0.3 0.3 0.3 0.3 0.3 0.5 0.2 0.2 0.3 0.3 0.3 0.2 0.3
0
0.4 0.2 0.4 0.4 0.4 0.6 0.5 0.5
[1] 1tbh.a 0.5 0.5 0.5 0.5 0.5 0.3 0.5 0.4 0.3 0.4 0.4 0.4 0.5 0.3 0.4 0.4 0.4 0.4 0.3 0.4 0.4
0
0.3 0.4 0.5 0.5 0.6 0.5 0.6
[1] 1tbj.a 0.5 0.5 0.4 0.4 0.4 0.2 0.3 0.2 0.2 0.2 0.3 0.3 0.5 0.1 0.2 0.2 0.2 0.2 0.1 0.3 0.2 0.3
0
0.4 0.4 0.4 0.6 0.4 0.5
[1] 1tbl.a 0.6 0.6 0.6 0.6 0.5 0.4 0.6 0.4 0.4 0.4 0.5 0.5 0.6 0.4 0.4 0.4 0.4 0.5 0.4 0.5 0.4 0.4 0.4
0
0.6 0.6 0.7 0.6 0.7
[1] 1zpe.a 0.3 0.3 0.6 0.1 0.6 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.3 0.4 0.5 0.5 0.5 0.5 0.4 0.5 0.4 0.5 0.4 0.6
0
0.1 0.7 0.3 0.4
[1] 1zpg.a 0.3 0.3 0.6 0.2 0.6 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.3 0.4 0.5 0.5 0.5 0.5 0.4 0.5 0.4 0.5 0.4 0.6 0.1
0
0.7 0.3 0.4
[1] 3e8q.a 0.7 0.7 0.6 0.7 0.6 0.6 0.7 0.6 0.6 0.6 0.6 0.6 0.7 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.6 0.7 0.7 0.7
0
0.7 0.7
[1] 3e8z.b 0.2 0.3 0.6 0.3 0.5 0.5 0.5 0.5 0.5 0.5 0.4 0.5 0.3 0.4 0.4 0.5 0.4 0.4 0.4 0.5 0.5 0.5 0.4 0.6 0.3 0.3 0.7
0
0.4
[1] 3e9b.a 0.3 0.3 0.7 0.4 0.6 0.6 0.6 0.6 0.6 0.5 0.6 0.6 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.6 0.5 0.6 0.5 0.7 0.4 0.4 0.7 0.4
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1d3v.a
1hq5.a
1hqf.a
1hqg.a
1hqh.a
1p8m.b
1p8n.a
1p8o.a
1p8p.c
1p8q.a
1p8r.a
1p8s.b
1r1o.a
1rla.a
1t4p.a
1t4r.c
1t4s.a
1t4t.a
1t5f.b
1t5g.a
1ta1.a
1tbh.a
1tbj.a
1tbl.a
1zpe.a
1zpg.a
3e8q.a
3e8z.b
3e9b.a
[1] 1d3v.a
0
0.2 0.7 0.5 0.6 0.7 0.7 0.7 0.6 0.8 0.5 0.7 0.7 0.5 0.5 0.6 0.5 0.5 0.5 0.6 0.7 0.7 0.6 0.7 0.3 0.4 0.8 0.3 0.4
[1] 1hq5.a 0.2
0
0.7 0.5 0.6 0.7 0.7 0.7 0.6 0.8 0.5 0.7 0.7 0.5 0.5 0.6 0.5 0.5 0.5 0.6 0.7 0.7 0.6 0.7 0.4 0.4 0.8 0.3 0.4
[1] 1hqf.a 0.7 0.7
0
0.8 0.4 0.7 0.7 0.6 0.5 0.7 0.8 0.7 0.7 0.5 0.5 0.6 0.6 0.5 0.5 0.6 0.6 0.7 0.6 0.7 0.7 0.7 0.8 0.7 0.7
[1] 1hqg.a 0.5 0.5 0.8
0
0.7 0.7 0.8 0.7 0.6 0.8 0.7 0.8 0.7 0.5 0.6 0.7 0.6 0.6 0.5 0.5 0.5 0.6 0.6 0.8 0.1 0.2 0.8 0.5 0.5
[1] 1hqh.a 0.6 0.6 0.4 0.7
0
0.7 0.7 0.6 0.5 0.7 0.7 0.6 0.7 0.5 0.4 0.5 0.5 0.4 0.4 0.5 0.6 0.6 0.5 0.6 0.6 0.6 0.8 0.6 0.6
[1] 1p8m.b 0.7 0.7 0.7 0.7 0.7
0
0.5 0.3 0.6 0.5 0.6 0.5 0.6 0.5 0.5 0.6 0.7 0.6 0.4 0.5 0.5 0.6 0.5 0.7 0.6 0.6 0.8 0.7 0.7
[1] 1p8n.a 0.7 0.7 0.7 0.8 0.7 0.5
0
0.4 0.6 0.5 0.6 0.5 0.6 0.5 0.6 0.6 0.7 0.6 0.5 0.6 0.7 0.7 0.6 0.7 0.7 0.7 0.8 0.7 0.7
[1] 1p8o.a 0.7 0.7 0.6 0.7 0.6 0.3 0.4
0
0.5 0.4 0.6 0.4 0.5 0.4 0.4 0.5 0.6 0.5 0.4 0.5 0.5 0.6 0.5 0.7 0.6 0.6 0.8 0.6 0.7
[1] 1p8p.c 0.6 0.6 0.5 0.6 0.5 0.6 0.6 0.5
0
0.6 0.7 0.6 0.7 0.3 0.3 0.5 0.6 0.4 0.2 0.3 0.4 0.5 0.4 0.6 0.5 0.5 0.7 0.6 0.6
[1] 1p8q.a 0.8 0.8 0.7 0.8 0.7 0.5 0.5 0.4 0.6
0
0.6 0.5 0.6 0.6 0.6 0.7 0.7 0.6 0.6 0.6 0.7 0.7 0.6 0.7 0.7 0.8 0.8 0.8 0.8
[1] 1p8r.a 0.5 0.5 0.8 0.7 0.7 0.6 0.6 0.6 0.7 0.6
0
0.6 0.7 0.6 0.6 0.7 0.6 0.6 0.6 0.6 0.7 0.7 0.7 0.8 0.6 0.6 0.8 0.6 0.7
[1] 1p8s.b 0.7 0.7 0.7 0.8 0.6 0.5 0.5 0.4 0.6 0.5 0.6
0
0.6 0.5 0.5 0.6 0.6 0.5 0.5 0.6 0.6 0.7 0.6 0.7 0.7 0.7 0.8 0.7 0.7
[1] 1r1o.a 0.7 0.7 0.7 0.7 0.7 0.6 0.6 0.5 0.7 0.6 0.7 0.6
0
0.7 0.6 0.7 0.8 0.7 0.7 0.7 0.8 0.8 0.7 0.7 0.7 0.7 0.9 0.7 0.7
[1] 1rla.a 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.4 0.3 0.6 0.6 0.5 0.7
0
0.2 0.4 0.5 0.3 0.1 0.3 0.4 0.5 0.3 0.6 0.5 0.5 0.7 0.5 0.5
[1] 1t4p.a 0.5 0.5 0.5 0.6 0.4 0.5 0.6 0.4 0.3 0.6 0.6 0.5 0.6 0.2
0
0.4 0.5 0.3 0.2 0.3 0.4 0.5 0.3 0.6 0.5 0.5 0.7 0.5 0.5
[1] 1t4r.c 0.6 0.6 0.6 0.7 0.5 0.6 0.6 0.5 0.5 0.7 0.7 0.6 0.7 0.4 0.4
0
0.5 0.3 0.4 0.4 0.5 0.6 0.5 0.6 0.6 0.6 0.8 0.6 0.6
[1] 1t4s.a 0.5 0.5 0.6 0.6 0.5 0.7 0.7 0.6 0.6 0.7 0.6 0.6 0.8 0.5 0.5 0.5
0
0.4 0.5 0.5 0.6 0.6 0.5 0.6 0.5 0.5 0.7 0.5 0.6
[1] 1t4t.a 0.5 0.5 0.5 0.6 0.4 0.6 0.6 0.5 0.4 0.6 0.6 0.5 0.7 0.3 0.3 0.3 0.4
0
0.3 0.4 0.5 0.5 0.4 0.6 0.5 0.5 0.8 0.5 0.5
[1] 1t5f.b 0.5 0.5 0.5 0.5 0.4 0.4 0.5 0.4 0.2 0.6 0.6 0.5 0.7 0.1 0.2 0.4 0.5 0.3
0
0.2 0.2 0.3 0.2 0.5 0.5 0.5 0.7 0.5 0.5
[1] 1t5g.a 0.6 0.6 0.6 0.5 0.5 0.5 0.6 0.5 0.3 0.6 0.6 0.6 0.7 0.3 0.3 0.4 0.5 0.4 0.2
0
0.3 0.4 0.3 0.6 0.5 0.5 0.7 0.6 0.6
[1] 1ta1.a 0.7 0.7 0.6 0.5 0.6 0.5 0.7 0.5 0.4 0.7 0.7 0.6 0.8 0.4 0.4 0.5 0.6 0.5 0.2 0.3
0
0.5 0.4 0.6 0.5 0.5 0.8 0.6 0.6
[1] 1tbh.a 0.7 0.7 0.7 0.6 0.6 0.6 0.7 0.6 0.5 0.7 0.7 0.7 0.8 0.5 0.5 0.6 0.6 0.5 0.3 0.4 0.5
0
0.4 0.7 0.5 0.6 0.8 0.7 0.7
[1] 1tbj.a 0.6 0.6 0.6 0.6 0.5 0.5 0.6 0.5 0.4 0.6 0.7 0.6 0.7 0.3 0.3 0.5 0.5 0.4 0.2 0.3 0.4 0.4
0
0.6 0.5 0.5 0.7 0.6 0.6
[1] 1tbl.a 0.7 0.7 0.7 0.8 0.6 0.7 0.7 0.7 0.6 0.7 0.8 0.7 0.7 0.6 0.6 0.6 0.6 0.6 0.5 0.6 0.6 0.7 0.6
0
0.7 0.7 0.8 0.7 0.7
[1] 1zpe.a 0.3 0.4 0.7 0.1 0.6 0.6 0.7 0.6 0.5 0.7 0.6 0.7 0.7 0.5 0.5 0.6 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.7
0
0.4 0.8 0.4 0.4
[1] 1zpg.a 0.4 0.4 0.7 0.2 0.6 0.6 0.7 0.6 0.5 0.8 0.6 0.7 0.7 0.5 0.5 0.6 0.5 0.5 0.5 0.5 0.5 0.6 0.5 0.7 0.4
0
0.8 0.4 0.5
[1] 3e8q.a 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.7 0.8 0.8 0.8 0.9 0.7 0.7 0.8 0.7 0.8 0.7 0.7 0.8 0.8 0.7 0.8 0.8 0.8
0
0.8 0.8
[1] 3e8z.b 0.3 0.3 0.7 0.5 0.6 0.7 0.7 0.6 0.6 0.8 0.6 0.7 0.7 0.5 0.5 0.6 0.5 0.5 0.5 0.6 0.6 0.7 0.6 0.7 0.4 0.4 0.8
0
0.4
[1] 3e9b.a 0.4 0.4 0.7 0.5 0.6 0.7 0.7 0.7 0.6 0.8 0.7 0.7 0.7 0.5 0.5 0.6 0.6 0.5 0.5 0.6 0.6 0.7 0.6 0.7 0.4 0.5 0.8 0.4
0
[Binding site full-atom RMSD matrix]







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