ARGD_SALTY_1_405

Acetylornithine/succinyldiaminopimelate aminotransferase [Class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains homodimer[show domain annotation]
 • A1 (ARGD_SALTY):R: Pyridoxal phosphate binding (108,109)
R: Pyridoxal phosphate binding (226,228,229)
51,107,112,141:144,193,198,255,377
51,107:109,112,141:144,193,198,226,228,229,255,377
 • A2 (ARGD_SALTY):282:284282:284

Full PDB list

2pb0,2pb2,4jev,4jew,4jex,4jey,4jez,4jf0,4jf1 (redundant pocketome entry)

Contact map

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ligand
A1 A2
I
5
1
S
1
0
7
G
1
0
8
T
1
0
9
N
1
1
2
F
1
4
1
H
1
4
2
G
1
4
3
R
1
4
4
E
1
9
3
E
1
9
8
D
2
2
6
V
2
2
8
Q
2
2
9
K
2
5
5
R
3
7
7
G
2
8
2
S
2
8
3
T
2
8
4
[1]4jez.a p00 19 . . . . . . . . . . . . . . . . . . .
[1]4jew.a p00 24 . . . . . . . . . . . . . . . . . . .
[1]4jev.a pxg 25 . . . . . . . . . . . . . . . . . . .
[1]2pb0.a plp 15 . . . . . . . . . . . . . . * . . . .
[1]2pb2.b none . . . . . . . . . . . . . . . . . . .
[1]4jey.a plp 16 . . . . . . . . . . A . . . . . . . .
[2]4jf0.b none . . . . . . . . . . . . . . * . . . .
[1]4jf1.a plp 15 . . . . . . . . Q . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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