If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

ALL2_AEDAE_19_321_lipid

37 kDa salivary gland allergen Aed a 2

Composition of the binding site

Protein chains monomer
A1 (ALL2_AEDAE):31, 35, 52, 53, 55, 57, 68, 72, 73, 76, 78, 131, 135, 146:148, 153, 16731, 35, 52, 53, 55, 57, 68, 72, 73, 76, 78, 131, 135, 146:148, 153, 167

Full PDB list

3dxl, 3dy9, 3dye, 3dzt (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
F
3
1
M
3
5
W
5
2
W
5
5
N
5
7
F
6
8
V
7
2
L
7
3
T
7
6
L
7
8
Y
1
3
1
H
1
3
5
F
1
4
6
H
1
4
7
G
1
4
8
T
1
5
3
K
1
6
7
[1]3dy9.a none . . . . . . . . . . . . . . . . .
[1]3dzt.a eah23 . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
F
3
1
M
3
5
W
5
2
K
5
3
W
5
5
N
5
7
F
6
8
V
7
2
L
7
3
T
7
6
L
7
8
Y
1
3
1
H
1
3
5
F
1
4
6
H
1
4
7
G
1
4
8
T
1
5
3
K
1
6
7
[1]3dy9.a . . . . . . . . . . . . . . . . . .
[1]3dzt.a . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3dy9.a is apo
3dzt.a:eah
[1] 3dy9.a
-
0.1
[1] 3dzt.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3dy9.a
3dzt.a
[1] 3dy9.a
0
.01
[1] 3dzt.a .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3dy9.a
3dzt.a
[1] 3dy9.a
0
0.3
[1] 3dzt.a 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3dy9.a
3dzt.a
[1] 3dy9.a
0
0.5
[1] 3dzt.a 0.5
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...