ALKB_ECOLI_10_215

Alpha-ketoglutarate-dependent dioxygenase AlkB [AlkB family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (ALKB_ECOLI):R: Substrate binding (76)
D: Fe2OG dioxygenase (118,120,122,128:131,133,143,145,154,156,170,178,182,183,185,187,189,204,206,208,210)
R: Alpha-ketoglutarate binding (120,122)
R: Alpha-ketoglutarate binding (204,206,208,210)
57,61,69
57,61,69,76,118,120,122,128:131,133,143,145,154,156,170,178,182,183,185,187,189,204,206,208,210
Metals (Me):Co/Fe/Mn

Full PDB list

2fd8,2fdf,2fdg,2fdh,2fdi,2fdj,2fdk,3bi3,3bie,3bkz,3i2o,3i3m,3i3q,3i49,3khb,3khc,3o1m,3o1o,3o1p,3o1r,3o1s,3o1t,3o1u,3o1v,3t3y,3t4h,3t4v,4jht,4nid,4nig,4nih,4nii,4rfr,4zhn (redundant pocketome entry)

Contact map

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ligand
A1 Me
M
5
7
M
6
1
W
6
9
Y
7
6
L
1
1
8
N
1
2
0
Y
1
2
2
L
1
2
8
S
1
2
9
L
1
3
0
H
1
3
1
D
1
3
3
I
1
4
3
S
1
4
5
F
1
5
4
F
1
5
6
L
1
7
0
W
1
7
8
S
1
8
2
R
1
8
3
F
1
8
5
H
1
8
7
I
1
8
9
R
2
0
4
N
2
0
6
T
2
0
8
R
2
1
0
[1]3o1u.a mdv 25 . . . . . . . . C . . . . . . . . . . . . . . . . . . Fe
[1]4rfr.b rhn 21 . . . . . . . . . . . . . . . . . . . . . . . . . . . Mn
[1]3o1t.a none . . . . . . . . C . . . . . . . . . . . . . . . . . . Fe
[1]4jht.a 8xq 14 . . . . . . . . . . . . . . . . . . . . . . . . . . . Mn
[1]3t3y.a md6 14 . . . . . . . . . . . . . . . . . . . . . . . . . . . Fe
[1]2fdi.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . Fe
[1]3t4h.b md5 22 . . . . . . . . . . . . . . . . . . . . . . . . . . . Fe
[1]3t4v.a md3 23 . . . . . . . . . . . . . . . . . . . . . . . . . . . Fe
[1]4zhn.a none . . . . . . . . . . . . . . . . . . . . . . . . . A . Co

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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