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ALF_ENCCU_1_338

Fructose-bisphosphate aldolase [Class I fructose-bisphosphate aldolase family]

Composition of the binding site

Protein chains monomer
A1 (ALF_ENCCU):26, 28:30, 33, 101, 138, 140, 179, 221, 262:264, 292:29526, 28:30, 33, 101, 138, 140, 179, 221, 262:264, 292:295

Full PDB list

3mbd, 3mbf, 3qrh

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
A
2
6
D
2
8
E
2
9
T
3
0
T
3
3
K
1
0
1
K
1
3
8
R
1
4
0
E
1
7
9
K
2
2
1
L
2
6
2
S
2
6
3
G
2
6
4
S
2
9
2
F
2
9
3
A
2
9
4
R
2
9
5
[1]3mbd.a none . . . . . . . . . . . . . . . . .
[1]3mbf.a 2fp19 . . . . . . . . . * . . . . . . .
[1]3qrh.a g3h9 . . . . . . . . . * . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
A
2
6
D
2
8
E
2
9
T
3
0
T
3
3
K
1
0
1
K
1
3
8
R
1
4
0
E
1
7
9
K
2
2
1
L
2
6
2
S
2
6
3
G
2
6
4
S
2
9
2
F
2
9
3
A
2
9
4
R
2
9
5
[1]3mbd.a . . . . . . . . . * . . . . . . .
[1]3mbf.a . . . . . . . . . * . . . . . . .
[1]3qrh.a . . . . . . . . . * . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3mbd.a is apo
3mbf.a:2fp
3qrh.a:g3h
[1] 3mbd.a
-
0.6 0.7
[1] 3mbf.a -
0.5
0.5
[1] 3qrh.a - 0.6
0.6
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3mbd.a
3mbf.a
3qrh.a
[1] 3mbd.a
0
.02 .01
[1] 3mbf.a .02
0
.02
[1] 3qrh.a .01 .02
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3mbd.a
3mbf.a
3qrh.a
[1] 3mbd.a
0
0.2 0.1
[1] 3mbf.a 0.2
0
0.2
[1] 3qrh.a 0.1 0.2
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3mbd.a
3mbf.a
3qrh.a
[1] 3mbd.a
0
0.2 0.1
[1] 3mbf.a 0.2
0
0.2
[1] 3qrh.a 0.1 0.2
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

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