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ALBU_HUMAN_25_609_diazepamSite

Serum albumin [ALB/AFP/VDB family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ALBU_HUMAN):D: Albumin 2 (366, 368, 369, 372)
D: Albumin 3 (408, 411:416, 418, 419, 427, 430, 431, 434, 435, 438, 439, 441:443, 446, 447, 450, 451, 454, 455, 457, 458, 461, 462, 469, 470, 473:477, 481, 484, 485, 487:489, 491, 493, 497, 509, 510, 512, 513, 515)
366, 368, 369, 372, 408, 411:416, 418, 419, 427, 430, 431, 434, 435, 438, 439, 441:443, 446, 447, 450, 451, 454, 455, 457, 458, 461, 462, 469, 470, 473:477, 481, 484, 485, 487:489, 491, 493, 497, 509, 510, 512, 513, 515

Full PDB list

1ao6, 1bj5, 1bke, 1bm0, 1e78, 1e7a, 1e7b, 1e7c, 1e7e, 1e7f, 1e7g, 1e7h, 1e7i, 1gni, 1gnj, 1h9z, 1ha2, 1hk1, 1hk2, 1hk3, 1hk4, 1hk5, 1n5u, 1o9x, 1tf0, 1uor, 2bx8, 2bxa, 2bxb, 2bxc, 2bxd, 2bxe, 2bxf, 2bxg, 2bxh, 2bxi, 2bxk, 2bxl, 2bxm, 2bxn, 2bxo, 2bxp, 2bxq, 2i2z, 2i30, 2vdb, 2vue, 2vuf, 2xsi, 2xvq, 2xvu, 2xvv, 2xvw, 2xw0, 2xw1, 3a73, 3b9l, 3b9m, 3cx9, 3jqz, 3lu6, 3lu7, 3lu8, 3tdl, 3uiv, 4e99, 4iw1, 4iw2, 4l8u, 4l9k, 4l9q, 4la0, 4lb2, 4lb9, 4z69, 5id7, 5ujb, 5x52, 5yoq, 6ezq (redundant Pocketome entry); 2ydf, 3jry, 3sqj, 4bke, 4emx, 4g03, 4g04, 4hgk, 4hgm, 4k2c, 4k71, 4n0f, 4s1y, 5gix, 5giy, 5ifo, 5ijf, 5vnw (unprocessed)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
S
3
6
6
V
3
6
8
L
3
6
9
R
3
7
2
P
4
0
8
L
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1
1
I
4
1
2
Q
4
1
4
N
4
1
5
C
4
1
6
L
4
1
8
F
4
2
7
A
4
3
0
L
4
3
1
R
4
3
4
Y
4
3
5
K
4
3
8
V
4
3
9
V
4
4
2
S
4
4
3
T
4
4
6
V
4
5
0
L
4
5
4
V
4
5
7
G
4
5
8
C
4
6
1
C
4
6
2
M
4
7
0
A
4
7
3
E
4
7
4
L
4
7
7
L
4
8
1
L
4
8
4
L
4
8
7
H
4
8
8
T
4
9
1
V
4
9
7
R
5
0
9
P
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1
0
F
5
1
2
S
5
1
3
[1]1e7a.a pfl13 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1e7b.a hlt7 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1hk3.a t4424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2bxa.b c1f17 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2bxe.a 1fl18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2bxf.a dzp20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2bxg.a ibp15 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2bxh.a ios14 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2xvq.a 9ds22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2xvu.a 9dn25 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2xw0.b 9nf26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2xw1.b 9nv22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4e99.a p8s29 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5x52.a oca10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5yoq.a clt12 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1e7f.a dao,dao27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1e7h.a plm,plm35 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1e7i.a ste,ste39 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1gni.a ola,ola40 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1gnj.a acd,acd,acd49 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2vdb.a dka,dka24 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]3a73.b myr,myr32 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]4z69.a f15,plm35 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]5id7.a 6a424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]6ezq.a c7k27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[3]1uor.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
S
3
6
6
V
3
6
8
L
3
6
9
R
3
7
2
P
4
0
8
L
4
1
1
I
4
1
2
K
4
1
3
Q
4
1
4
N
4
1
5
C
4
1
6
L
4
1
8
F
4
1
9
F
4
2
7
A
4
3
0
L
4
3
1
R
4
3
4
Y
4
3
5
K
4
3
8
V
4
3
9
Q
4
4
1
V
4
4
2
S
4
4
3
T
4
4
6
L
4
4
7
V
4
5
0
S
4
5
1
L
4
5
4
G
4
5
5
V
4
5
7
G
4
5
8
C
4
6
1
C
4
6
2
R
4
6
9
M
4
7
0
A
4
7
3
E
4
7
4
D
4
7
5
Y
4
7
6
L
4
7
7
L
4
8
1
L
4
8
4
C
4
8
5
L
4
8
7
H
4
8
8
E
4
8
9
T
4
9
1
V
4
9
3
V
4
9
7
R
5
0
9
P
5
1
0
F
5
1
2
S
5
1
3
L
5
1
5
[1]1e7a.a . . . * . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]1e7b.a . . . * . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]1hk3.a . . . * . * . . . * . . . . . . . * . . . . . . . . . . . * . . . . . . * . . . * * . . . . . . . . . * * .
[1]2bxa.b . . . * . * . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]2bxe.a . . . * . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . * . . . . . . . * .
[1]2bxf.a . . . * . . . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . * * .
[1]2bxg.a . . . * . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]2bxh.a . . . * . * . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . . * . . . . . . . * .
[1]2xvq.a . . . * . . . . . * . . . . . . . * . . . . . . . . . . . . . . . . . . * . . . * * . . * . . . . . . . * .
[1]2xvu.a . . . * . . . . . * . . . . . . . * . . . . . . . . . . . . . . . . . . * . . . * * . . * . . . . . . . * .
[1]2xw0.b . . . * . . . . . * . . . . . . . * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]2xw1.b . . . * . . . . . * . . . . . . . * . . . . . . . . . . . . . . . . . . * . . . * * . . . . . . . . . . * .
[1]4e99.a . . . * . . * . * * . . . . . . * * . . . . . . . . . . . * . . . . . . * . . . * * . . * . . . . . . * * .
[1]5x52.a . . . * . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . * * . . . . . . . * .
[1]5yoq.a . . . . . * . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . * . . . * * . * * . . . . . . . * .
[2]1e7f.a . . . . . . . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . .
[2]1e7h.a . . . . . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1e7i.a . . . . . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1gni.a . . . . . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1gnj.a . . . . . . . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2vdb.a . . . . . . . . . * . . . . . . * . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . .
[2]3a73.b . . . . . . . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]4z69.a . . . . . . . . . * . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]5id7.a . . . . . . . . * . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . .
[2]6ezq.a . . . . . . . . . . . . . . . . * * . . . * . . . . . . . * . . . . . . . . . . . * . . . . . . . . . . . .
[3]1uor.a . . . . . * . . * * . . . . . . * * . . . . . . . . . . . * . . . . . . * . . . * * . . * . . . . . . * * .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1e7a.a:pfl
1e7b.a:hlt
1hk3.a:t44
2bxa.b:c1f
2bxe.a:1fl
2bxf.a:dzp
2bxg.a:ibp
2bxh.a:ios
2xvq.a:9ds
2xvu.a:9dn
2xw0.b:9nf
2xw1.b:9nv
4e99.a:p8s
5x52.a:oca
5yoq.a:clt
1e7f.a:dao
1e7h.a:plm
1e7i.a:ste
1gni.a:ola
1gnj.a:acd
2vdb.a:dka
3a73.b:myr
4z69.a:f15,plm
5id7.a:6a4
6ezq.a:c7k
1uor.a is apo
[1] 1e7a.a
0.1
0 3.0 0.5 0.4 0.9 0.5 0 0.5 0.9 2.1 2.3 0.6 0 0.1 6.1 7.8 7.5 7.9 10 6.1 8.0 8.2 6.8 4.8 -
[1] 1e7b.a 0.1
0
3.8 0.4 0.1 1.0 0.3 0 0.4 0.7 2.8 2.1 0.2 0 0 6.2 8.4 8.9 8.6 11 6.5 9.0 8.7 7.5 5.0 -
[1] 1hk3.a 1.5 1.2
0.1
1.4 2.0 2.1 2.6 1.2 1.3 1.5 2.0 2.4 2.9 0.7 0.9 7.2 8.7 8.1 9.0 12 6.4 9.0 9.9 6.8 6.1 -
[1] 2bxa.b 0.2 0 3.3
0.2
0.1 1.7 0.4 0 0.4 0.4 3.3 1.8 0.3 0 0 7.1 9.3 9.2 9.9 12 7.2 9.9 9.7 8.0 6.0 -
[1] 2bxe.a 0.2 0.1 3.5 0.1
0
1.0 0.2 0.1 0.6 1.0 3.2 1.7 0.3 0.1 0.1 6.6 8.2 8.4 9.4 12 6.8 8.8 9.6 7.7 5.5 -
[1] 2bxf.a 0.1 0.2 2.5 0.1 0.1
0
0.5 0.1 0.2 0.2 1.7 0.4 0.3 0 0 6.0 8.1 7.5 8.3 11 5.7 8.4 8.4 6.8 5.6 -
[1] 2bxg.a 0 0 3.0 0.5 0.1 0.9
0.1
0 0.4 0.9 2.7 1.8 0.2 0 0 6.0 8.1 8.2 8.3 11 5.6 8.3 8.9 7.0 4.8 -
[1] 2bxh.a 0.3 0 3.7 0.7 0.2 1.6 0.4
0
0.6 0.9 2.9 2.9 0.4 0 0.1 6.9 9.4 9.8 10 12 6.7 9.7 10 8.1 6.6 -
[1] 2xvq.a 0.1 0 1.4 0 0.1 0.7 0.2 0
0
0 0 0.2 0.2 0 0 6.7 8.0 8.3 8.4 11 6.3 8.4 8.6 7.3 5.3 -
[1] 2xvu.a 0 0 1.7 0 0 0.6 0.2 0 0
0
0 0.1 0.2 0 0 7.0 8.6 8.7 8.8 12 7.3 9.1 9.0 7.3 5.7 -
[1] 2xw0.b 0 0 2.0 0.1 0.1 0.6 0.4 0 0 0
0
0.1 0.3 0 0 6.7 8.8 8.0 8.9 12 6.7 9.0 9.2 7.8 5.3 -
[1] 2xw1.b 0 0 2.0 0.1 0.1 0.7 0.2 0 0 0 0.2
0.1
0.3 0 0 6.6 8.8 8.2 9.0 12 6.2 9.0 9.1 7.3 5.7 -
[1] 4e99.a 0.5 0.6 5.4 1.0 0.4 2.0 0.9 0.1 1.4 2.6 4.4 2.8
0.5
0 0.1 9.2 12 13 12 16 8.4 11 12 9.7 7.9 -
[1] 5x52.a 0.1 0.3 3.9 1.2 1.0 1.3 1.0 0.2 0.9 1.9 3.4 2.8 0.7
0
0.2 7.1 8.8 8.9 9.0 12 6.0 9.6 9.4 7.2 5.9 -
[1] 5yoq.a 0.1 0.1 3.1 1.3 1.2 2.1 0.9 0.1 1.1 1.9 2.9 2.7 0.7 0
0.1
7.1 8.9 9.3 9.2 12 6.2 9.5 9.2 6.9 5.7 -
[2] 1e7f.a 0.4 0.1 2.9 1.1 1.1 1.1 1.6 0.7 1.5 1.6 3.2 2.6 1.6 0.6 0.8
0
0.3 1.1 0.4 1.0 0.3 0.8 0.7 0.6 1.7 -
[2] 1e7h.a 0.5 0.1 3.5 1.3 0.7 0.9 1.3 0.7 1.6 1.9 3.0 3.0 1.5 0.6 0.8 0.1
0
0.2 0.1 0.4 0.3 0.1 0.1 0.5 1.7 -
[2] 1e7i.a 0.5 0.1 3.1 0.9 0.6 0.9 1.4 0.6 1.1 1.4 2.8 2.8 1.3 0.4 0.5 0 0
0
0.1 0.1 0.2 0 0.2 0.3 1.7 -
[2] 1gni.a 0.4 0.1 3.2 1.1 0.7 0.8 1.4 0.7 1.4 1.9 3.1 2.9 1.3 0.3 0.8 0 0 0
0
0.5 0.2 0.1 0.1 0.5 1.7 -
[2] 1gnj.a 0.4 0 2.9 1.2 0.7 1.0 1.5 0.6 1.4 1.6 3.1 3.1 1.1 0.2 0.5 0.1 0 0 0.2
0.1
0.4 0 0.4 0.3 1.7 -
[2] 2vdb.a 0.2 0 3.6 0.9 0.4 0.9 0.9 0.4 0.7 1.6 3.3 2.7 0.7 0.2 0.4 0.6 1.5 1.8 1.3 3.0
0.4
1.7 1.8 0.6 1.5 -
[2] 3a73.b 0.5 0.2 4.1 1.6 1.1 1.1 1.7 0.6 1.6 1.9 3.2 3.5 1.4 0.3 0.8 0.5 0.2 0.3 0.6 0.7 0.6
0.3
0.7 0.4 1.9 -
[2] 4z69.a 0.1 0 2.8 0.8 0.6 1.0 1.1 0.4 0.9 1.4 3.1 2.7 0.9 0.4 0.5 0.1 0.3 0.2 0.1 0.7 0.2 0.3
0.1
0.3 1.9 -
[2] 5id7.a 0.3 0.1 4.2 1.3 0.8 1.1 1.2 0.4 0.8 1.4 3.3 3.0 1.1 0.1 0.5 0 0.7 0.5 0.6 1.0 0.5 0.8 1.0
0.4
1.5 -
[2] 6ezq.a 0.4 0.1 2.5 1.1 0.6 0.5 1.9 0 1.2 1.5 3.2 1.5 1.9 0.1 0.6 1.5 3.0 2.4 3.2 5.8 1.1 2.2 3.2 1.2
0
-
[3] 1uor.a 2.3 1.6 6.3 2.8 3.0 3.8 3.1 1.9 3.0 4.1 5.8 5.5 2.9 2.0 1.8 8.4 10 12 12 15 7.9 11 11 7.7 7.6
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (3 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1e7a.a
1e7b.a
1hk3.a
2bxa.b
2bxe.a
2bxf.a
2bxg.a
2bxh.a
2xvq.a
2xvu.a
2xw0.b
2xw1.b
4e99.a
5x52.a
5yoq.a
1e7f.a
1e7h.a
1e7i.a
1gni.a
1gnj.a
2vdb.a
3a73.b
4z69.a
5id7.a
6ezq.a
1uor.a
[1] 1e7a.a
0
.04 .09 .07 .07 .07 .05 .07 .09 .09 .08 .09 .18 .08 .09 .21 .23 .24 .22 .24 .19 .26 .22 .24 .22 .26
[1] 1e7b.a .04
0
.11 .05 .04 .07 .04 .06 .10 .09 .09 .09 .16 .06 .09 .22 .24 .25 .23 .24 .22 .25 .23 .24 .25 .24
[1] 1hk3.a .09 .11
0
.11 .14 .11 .12 .13 .09 .09 .09 .09 .23 .14 .15 .25 .27 .28 .26 .28 .23 .29 .26 .27 .25 .28
[1] 2bxa.b .07 .05 .11
0
.06 .08 .06 .04 .11 .10 .08 .08 .18 .07 .07 .25 .26 .28 .26 .27 .23 .28 .26 .27 .26 .23
[1] 2bxe.a .07 .04 .14 .06
0
.07 .03 .05 .09 .09 .09 .09 .16 .07 .09 .23 .25 .26 .24 .26 .23 .27 .25 .25 .27 .24
[1] 2bxf.a .07 .07 .11 .08 .07
0
.06 .09 .08 .07 .07 .08 .20 .10 .09 .22 .25 .25 .24 .25 .22 .26 .23 .25 .23 .28
[1] 2bxg.a .05 .04 .12 .06 .03 .06
0
.06 .09 .09 .07 .08 .18 .07 .08 .21 .23 .25 .23 .25 .21 .26 .23 .24 .25 .24
[1] 2bxh.a .07 .06 .13 .04 .05 .09 .06
0
.09 .09 .09 .09 .16 .06 .07 .23 .25 .27 .25 .27 .21 .28 .26 .26 .27 .24
[1] 2xvq.a .09 .10 .09 .11 .09 .08 .09 .09
0
.04 .04 .04 .21 .11 .12 .26 .27 .28 .26 .28 .24 .29 .26 .28 .27 .29
[1] 2xvu.a .09 .09 .09 .10 .09 .07 .09 .09 .04
0
.03 .04 .21 .12 .11 .25 .28 .28 .26 .28 .24 .29 .26 .28 .27 .30
[1] 2xw0.b .08 .09 .09 .08 .09 .07 .07 .09 .04 .03
0
.01 .22 .10 .11 .26 .27 .28 .26 .28 .24 .30 .27 .28 .27 .28
[1] 2xw1.b .09 .09 .09 .08 .09 .08 .08 .09 .04 .04 .01
0
.22 .10 .11 .26 .27 .28 .26 .28 .24 .30 .27 .29 .28 .28
[1] 4e99.a .18 .16 .23 .18 .16 .20 .18 .16 .21 .21 .22 .22
0
.16 .20 .34 .37 .37 .37 .38 .32 .36 .37 .35 .36 .23
[1] 5x52.a .08 .06 .14 .07 .07 .10 .07 .06 .11 .12 .10 .10 .16
0
.07 .24 .26 .28 .26 .27 .23 .27 .25 .26 .26 .23
[1] 5yoq.a .09 .09 .15 .07 .09 .09 .08 .07 .12 .11 .11 .11 .20 .07
0
.24 .27 .28 .27 .28 .23 .28 .26 .27 .26 .26
[2] 1e7f.a .21 .22 .25 .25 .23 .22 .21 .23 .26 .25 .26 .26 .34 .24 .24
0
.04 .06 .04 .05 .06 .07 .05 .06 .12 .36
[2] 1e7h.a .23 .24 .27 .26 .25 .25 .23 .25 .27 .28 .27 .27 .37 .26 .27 .04
0
.03 .01 .03 .06 .05 .03 .06 .14 .38
[2] 1e7i.a .24 .25 .28 .28 .26 .25 .25 .27 .28 .28 .28 .28 .37 .28 .28 .06 .03
0
.03 .02 .08 .05 .03 .06 .15 .37
[2] 1gni.a .22 .23 .26 .26 .24 .24 .23 .25 .26 .26 .26 .26 .37 .26 .27 .04 .01 .03
0
.03 .07 .06 .03 .07 .14 .38
[2] 1gnj.a .24 .24 .28 .27 .26 .25 .25 .27 .28 .28 .28 .28 .38 .27 .28 .05 .03 .02 .03
0
.09 .04 .03 .06 .15 .37
[2] 2vdb.a .19 .22 .23 .23 .23 .22 .21 .21 .24 .24 .24 .24 .32 .23 .23 .06 .06 .08 .07 .09
0
.09 .08 .07 .15 .35
[2] 3a73.b .26 .25 .29 .28 .27 .26 .26 .28 .29 .29 .30 .30 .36 .27 .28 .07 .05 .05 .06 .04 .09
0
.05 .05 .16 .34
[2] 4z69.a .22 .23 .26 .26 .25 .23 .23 .26 .26 .26 .27 .27 .37 .25 .26 .05 .03 .03 .03 .03 .08 .05
0
.06 .13 .37
[2] 5id7.a .24 .24 .27 .27 .25 .25 .24 .26 .28 .28 .28 .29 .35 .26 .27 .06 .06 .06 .07 .06 .07 .05 .06
0
.16 .33
[2] 6ezq.a .22 .25 .25 .26 .27 .23 .25 .27 .27 .27 .27 .28 .36 .26 .26 .12 .14 .15 .14 .15 .15 .16 .13 .16
0
.39
[3] 1uor.a .26 .24 .28 .23 .24 .28 .24 .24 .29 .30 .28 .28 .23 .23 .26 .36 .38 .37 .38 .37 .35 .34 .37 .33 .39
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1e7a.a
1e7b.a
1hk3.a
2bxa.b
2bxe.a
2bxf.a
2bxg.a
2bxh.a
2xvq.a
2xvu.a
2xw0.b
2xw1.b
4e99.a
5x52.a
5yoq.a
1e7f.a
1e7h.a
1e7i.a
1gni.a
1gnj.a
2vdb.a
3a73.b
4z69.a
5id7.a
6ezq.a
1uor.a
[1] 1e7a.a
0
0.2 0.4 0.3 0.5 0.3 0.3 0.4 0.3 0.3 0.3 0.3 0.8 0.5 0.5 1.0 1.2 1.3 1.3 1.3 1.0 1.3 1.2 1.2 1.3 1.0
[1] 1e7b.a 0.2
0
0.4 0.3 0.5 0.4 0.3 0.4 0.4 0.3 0.4 0.4 0.7 0.5 0.5 1.0 1.2 1.3 1.3 1.3 1.0 1.3 1.2 1.2 1.3 1.0
[1] 1hk3.a 0.4 0.4
0
0.3 0.6 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.9 0.6 0.6 1.0 1.2 1.3 1.3 1.4 1.1 1.3 1.2 1.2 1.3 1.0
[1] 2bxa.b 0.3 0.3 0.3
0
0.5 0.3 0.4 0.3 0.4 0.3 0.3 0.3 0.7 0.4 0.5 1.1 1.3 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.3 1.0
[1] 2bxe.a 0.5 0.5 0.6 0.5
0
0.5 0.4 0.5 0.5 0.5 0.5 0.5 0.8 0.6 0.7 1.2 1.4 1.4 1.4 1.5 1.1 1.4 1.3 1.3 1.4 1.1
[1] 2bxf.a 0.3 0.4 0.5 0.3 0.5
0
0.4 0.5 0.3 0.3 0.4 0.4 0.8 0.6 0.6 1.1 1.3 1.3 1.3 1.4 1.1 1.3 1.2 1.2 1.3 1.1
[1] 2bxg.a 0.3 0.3 0.5 0.4 0.4 0.4
0
0.4 0.3 0.3 0.4 0.4 0.8 0.5 0.5 1.1 1.3 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.4 1.1
[1] 2bxh.a 0.4 0.4 0.5 0.3 0.5 0.5 0.4
0
0.5 0.4 0.4 0.4 0.6 0.3 0.4 1.0 1.2 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.4 0.9
[1] 2xvq.a 0.3 0.4 0.5 0.4 0.5 0.3 0.3 0.5
0
0.2 0.3 0.3 0.8 0.6 0.6 1.0 1.3 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.3 1.1
[1] 2xvu.a 0.3 0.3 0.5 0.3 0.5 0.3 0.3 0.4 0.2
0
0.2 0.2 0.8 0.5 0.5 1.0 1.2 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.3 1.0
[1] 2xw0.b 0.3 0.4 0.5 0.3 0.5 0.4 0.4 0.4 0.3 0.2
0
0.2 0.8 0.5 0.6 1.0 1.2 1.2 1.3 1.3 1.0 1.3 1.1 1.2 1.3 1.1
[1] 2xw1.b 0.3 0.4 0.5 0.3 0.5 0.4 0.4 0.4 0.3 0.2 0.2
0
0.8 0.5 0.5 1.1 1.3 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.3 1.0
[1] 4e99.a 0.8 0.7 0.9 0.7 0.8 0.8 0.8 0.6 0.8 0.8 0.8 0.8
0
0.7 0.7 1.2 1.5 1.5 1.5 1.6 1.1 1.5 1.4 1.4 1.5 1.1
[1] 5x52.a 0.5 0.5 0.6 0.4 0.6 0.6 0.5 0.3 0.6 0.5 0.5 0.5 0.7
0
0.3 1.1 1.3 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.4 0.9
[1] 5yoq.a 0.5 0.5 0.6 0.5 0.7 0.6 0.5 0.4 0.6 0.5 0.6 0.5 0.7 0.3
0
1.0 1.2 1.3 1.3 1.4 1.0 1.3 1.2 1.2 1.4 1.0
[2] 1e7f.a 1.0 1.0 1.0 1.1 1.2 1.1 1.1 1.0 1.0 1.0 1.0 1.1 1.2 1.1 1.0
0
0.4 0.5 0.6 0.6 0.6 0.5 0.5 0.5 1.2 1.3
[2] 1e7h.a 1.2 1.2 1.2 1.3 1.4 1.3 1.3 1.2 1.3 1.2 1.2 1.3 1.5 1.3 1.2 0.4
0
0.2 0.3 0.3 0.7 0.4 0.4 0.4 1.3 1.5
[2] 1e7i.a 1.3 1.3 1.3 1.3 1.4 1.3 1.3 1.3 1.3 1.3 1.2 1.3 1.5 1.3 1.3 0.5 0.2
0
0.3 0.3 0.8 0.4 0.3 0.5 1.4 1.6
[2] 1gni.a 1.3 1.3 1.3 1.3 1.4 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.5 1.3 1.3 0.6 0.3 0.3
0
0.3 0.8 0.5 0.4 0.5 1.4 1.6
[2] 1gnj.a 1.3 1.3 1.4 1.4 1.5 1.4 1.4 1.4 1.4 1.4 1.3 1.4 1.6 1.4 1.4 0.6 0.3 0.3 0.3
0
0.8 0.5 0.5 0.4 1.4 1.7
[2] 2vdb.a 1.0 1.0 1.1 1.0 1.1 1.1 1.0 1.0 1.0 1.0 1.0 1.0 1.1 1.0 1.0 0.6 0.7 0.8 0.8 0.8
0
0.7 0.7 0.6 1.4 1.4
[2] 3a73.b 1.3 1.3 1.3 1.3 1.4 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.5 1.3 1.3 0.5 0.4 0.4 0.5 0.5 0.7
0
0.4 0.4 1.4 1.6
[2] 4z69.a 1.2 1.2 1.2 1.2 1.3 1.2 1.2 1.2 1.2 1.2 1.1 1.2 1.4 1.2 1.2 0.5 0.4 0.3 0.4 0.5 0.7 0.4
0
0.4 1.3 1.5
[2] 5id7.a 1.2 1.2 1.2 1.2 1.3 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.4 1.2 1.2 0.5 0.4 0.5 0.5 0.4 0.6 0.4 0.4
0
1.3 1.5
[2] 6ezq.a 1.3 1.3 1.3 1.3 1.4 1.3 1.4 1.4 1.3 1.3 1.3 1.3 1.5 1.4 1.4 1.2 1.3 1.4 1.4 1.4 1.4 1.4 1.3 1.3
0
1.6
[3] 1uor.a 1.0 1.0 1.0 1.0 1.1 1.1 1.1 0.9 1.1 1.0 1.1 1.0 1.1 0.9 1.0 1.3 1.5 1.6 1.6 1.7 1.4 1.6 1.5 1.5 1.6
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1e7a.a
1e7b.a
1hk3.a
2bxa.b
2bxe.a
2bxf.a
2bxg.a
2bxh.a
2xvq.a
2xvu.a
2xw0.b
2xw1.b
4e99.a
5x52.a
5yoq.a
1e7f.a
1e7h.a
1e7i.a
1gni.a
1gnj.a
2vdb.a
3a73.b
4z69.a
5id7.a
6ezq.a
1uor.a
[1] 1e7a.a
0
0.3 0.7 0.5 0.6 0.6 0.4 0.5 0.5 0.6 0.6 0.6 0.9 0.7 0.9 1.5 1.7 1.7 1.7 1.8 1.5 1.8 1.6 1.6 1.7 1.9
[1] 1e7b.a 0.3
0
0.8 0.5 0.6 0.7 0.4 0.5 0.5 0.7 0.7 0.7 0.9 0.7 0.9 1.5 1.6 1.7 1.7 1.7 1.5 1.7 1.6 1.6 1.6 1.9
[1] 1hk3.a 0.7 0.8
0
0.7 0.8 0.8 0.8 0.8 0.8 0.7 0.8 0.7 1.2 0.9 1.1 1.6 1.8 1.9 1.8 1.9 1.7 1.9 1.7 1.8 1.7 2.0
[1] 2bxa.b 0.5 0.5 0.7
0
0.6 0.6 0.5 0.5 0.6 0.7 0.6 0.6 0.9 0.7 1.0 1.6 1.8 1.8 1.8 1.9 1.6 1.9 1.7 1.7 1.7 1.9
[1] 2bxe.a 0.6 0.6 0.8 0.6
0
0.7 0.5 0.6 0.6 0.8 0.8 0.8 1.0 0.8 0.9 1.6 1.8 1.9 1.8 1.9 1.6 1.9 1.7 1.7 1.8 2.1
[1] 2bxf.a 0.6 0.7 0.8 0.6 0.7
0
0.6 0.8 0.6 0.7 0.7 0.7 1.1 0.9 1.1 1.5 1.7 1.8 1.8 1.8 1.6 1.8 1.7 1.7 1.7 2.0
[1] 2bxg.a 0.4 0.4 0.8 0.5 0.5 0.6
0
0.5 0.5 0.6 0.6 0.7 1.0 0.8 0.9 1.5 1.7 1.8 1.7 1.8 1.5 1.8 1.6 1.6 1.7 2.0
[1] 2bxh.a 0.5 0.5 0.8 0.5 0.6 0.8 0.5
0
0.6 0.7 0.8 0.7 0.8 0.7 0.9 1.5 1.7 1.8 1.7 1.8 1.4 1.8 1.6 1.6 1.7 1.9
[1] 2xvq.a 0.5 0.5 0.8 0.6 0.6 0.6 0.5 0.6
0
0.4 0.5 0.5 1.0 0.8 0.9 1.5 1.7 1.8 1.7 1.8 1.5 1.8 1.6 1.6 1.6 2.0
[1] 2xvu.a 0.6 0.7 0.7 0.7 0.8 0.7 0.6 0.7 0.4
0
0.4 0.4 1.0 0.8 1.0 1.6 1.7 1.8 1.8 1.8 1.6 1.8 1.7 1.7 1.7 2.0
[1] 2xw0.b 0.6 0.7 0.8 0.6 0.8 0.7 0.6 0.8 0.5 0.4
0
0.3 1.1 0.9 1.0 1.6 1.7 1.8 1.7 1.8 1.5 1.8 1.7 1.7 1.7 2.0
[1] 2xw1.b 0.6 0.7 0.7 0.6 0.8 0.7 0.7 0.7 0.5 0.4 0.3
0
1.1 0.9 1.0 1.6 1.7 1.8 1.8 1.9 1.5 1.8 1.7 1.7 1.7 2.0
[1] 4e99.a 0.9 0.9 1.2 0.9 1.0 1.1 1.0 0.8 1.0 1.0 1.1 1.1
0
0.9 1.1 1.7 1.9 2.0 1.9 2.0 1.6 2.0 1.8 1.8 1.9 2.1
[1] 5x52.a 0.7 0.7 0.9 0.7 0.8 0.9 0.8 0.7 0.8 0.8 0.9 0.9 0.9
0
0.7 1.5 1.7 1.8 1.7 1.8 1.5 1.7 1.6 1.6 1.7 1.9
[1] 5yoq.a 0.9 0.9 1.1 1.0 0.9 1.1 0.9 0.9 0.9 1.0 1.0 1.0 1.1 0.7
0
1.4 1.6 1.7 1.7 1.7 1.4 1.6 1.6 1.5 1.7 2.0
[2] 1e7f.a 1.5 1.5 1.6 1.6 1.6 1.5 1.5 1.5 1.5 1.6 1.6 1.6 1.7 1.5 1.4
0
0.6 0.7 0.8 0.7 0.8 0.9 0.7 0.8 1.4 2.4
[2] 1e7h.a 1.7 1.6 1.8 1.8 1.8 1.7 1.7 1.7 1.7 1.7 1.7 1.7 1.9 1.7 1.6 0.6
0
0.6 0.7 0.6 0.8 0.9 0.5 0.8 1.5 2.5
[2] 1e7i.a 1.7 1.7 1.9 1.8 1.9 1.8 1.8 1.8 1.8 1.8 1.8 1.8 2.0 1.8 1.7 0.7 0.6
0
0.7 0.6 1.0 0.9 0.7 0.9 1.7 2.6
[2] 1gni.a 1.7 1.7 1.8 1.8 1.8 1.8 1.7 1.7 1.7 1.8 1.7 1.8 1.9 1.7 1.7 0.8 0.7 0.7
0
0.7 1.0 1.0 0.8 0.9 1.6 2.5
[2] 1gnj.a 1.8 1.7 1.9 1.9 1.9 1.8 1.8 1.8 1.8 1.8 1.8 1.9 2.0 1.8 1.7 0.7 0.6 0.6 0.7
0
0.9 1.0 0.8 0.9 1.6 2.6
[2] 2vdb.a 1.5 1.5 1.7 1.6 1.6 1.6 1.5 1.4 1.5 1.6 1.5 1.5 1.6 1.5 1.4 0.8 0.8 1.0 1.0 0.9
0
1.1 0.8 0.9 1.6 2.4
[2] 3a73.b 1.8 1.7 1.9 1.9 1.9 1.8 1.8 1.8 1.8 1.8 1.8 1.8 2.0 1.7 1.6 0.9 0.9 0.9 1.0 1.0 1.1
0
0.9 0.9 1.7 2.6
[2] 4z69.a 1.6 1.6 1.7 1.7 1.7 1.7 1.6 1.6 1.6 1.7 1.7 1.7 1.8 1.6 1.6 0.7 0.5 0.7 0.8 0.8 0.8 0.9
0
0.8 1.5 2.5
[2] 5id7.a 1.6 1.6 1.8 1.7 1.7 1.7 1.6 1.6 1.6 1.7 1.7 1.7 1.8 1.6 1.5 0.8 0.8 0.9 0.9 0.9 0.9 0.9 0.8
0
1.6 2.5
[2] 6ezq.a 1.7 1.6 1.7 1.7 1.8 1.7 1.7 1.7 1.6 1.7 1.7 1.7 1.9 1.7 1.7 1.4 1.5 1.7 1.6 1.6 1.6 1.7 1.5 1.6
0
2.6
[3] 1uor.a 1.9 1.9 2.0 1.9 2.1 2.0 2.0 1.9 2.0 2.0 2.0 2.0 2.1 1.9 2.0 2.4 2.5 2.6 2.5 2.6 2.4 2.6 2.5 2.5 2.6
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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