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ACP1_SPIOL_57_138

Acyl carrier protein 1, chloroplastic [Acyl carrier protein (ACP) family]

Composition of the binding site

Protein chains monomer
A1 (ACP1_SPIOL):94, 95, 98

Full PDB list

2xz0, 2xz1

Pocket contact map

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PDB.ch
   
ligand
A1
S
9
4
V
9
8
[1]2xz0.d none * .
[1]2xz1.c pny9 sep .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
S
9
4
L
9
5
V
9
8
[1]2xz0.d sep . .
[1]2xz1.c sep . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2xz0.d is apo
2xz1.c:pny
[1] 2xz0.d
-
1.1
[1] 2xz1.c -
0.6
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2xz0.d
2xz1.c
[1] 2xz0.d
0
.17
[1] 2xz1.c .17
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2xz0.d
2xz1.c
[1] 2xz0.d
0
0.6
[1] 2xz1.c 0.6
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2xz0.d
2xz1.c
[1] 2xz0.d
0
1.2
[1] 2xz1.c 1.2
0
[Binding site full-atom RMSD matrix]







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[ENTRY 2D visualization]

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