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ACCD_STAA8_1_285

Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [AccD/PCCB family] / Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (ACCA_STAA8) [AccA family]

Composition of the binding site

Protein chains heterodimer [domain annotation]
A1 (ACCD_STAA8):D: CoA carboxyltransferase N-terminal (134, 166:168, 170, 206:208, 230:232, 235)134, 166:168, 170, 206:208, 230:232, 235
B1 (ACCA_STAA8):D: CoA carboxyltransferase C-terminal (198, 199, 220, 221, 229)198, 199, 220, 221, 229

Full PDB list

2f9i, 5kdr

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 B1
M
1
3
4
G
1
6
6
G
1
6
7
A
1
6
8
M
1
7
0
T
2
0
6
G
2
0
7
G
2
0
8
A
2
3
1
G
2
3
2
V
2
3
5
S
1
9
8
L
2
2
9
[1]2f9i.b none . . . . . . . . . . . . .
[1]5kdr.b yt533 . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 B1
M
1
3
4
G
1
6
6
G
1
6
7
A
1
6
8
M
1
7
0
T
2
0
6
G
2
0
7
G
2
0
8
F
2
3
0
A
2
3
1
G
2
3
2
V
2
3
5
S
1
9
8
G
1
9
9
V
2
2
0
I
2
2
1
L
2
2
9
[1]2f9i.b . . . . . . . . . . . . . . . . .
[1]5kdr.b . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2f9i.b is apo
5kdr.b:yt5
[1] 2f9i.b
-
0.9
[1] 5kdr.b -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2f9i.b
5kdr.b
[1] 2f9i.b
0
.05
[1] 5kdr.b .05
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2f9i.b
5kdr.b
[1] 2f9i.b
0
2.0
[1] 5kdr.b 2.0
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2f9i.b
5kdr.b
[1] 2f9i.b
0
2.0
[1] 5kdr.b 2.0
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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