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ABP1_MAIZE_39_201

Auxin-binding protein 1

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ABP1_MAIZE):R: Auxin binding (60, 63)
R: Auxin binding (92, 93)
R: Auxin binding (187, 189)
82, 84, 86, 95, 97, 101, 103, 168
60, 63, 82, 84, 86, 92, 93, 95, 97, 101, 103, 168, 187, 189
Metals (Me):Zn

Full PDB list

1lr5, 1lrh

Pocket contact map

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PDB.ch
   
ligand
A1 Me
L
6
3
W
8
2
Q
8
4
I
8
6
T
9
2
P
9
3
H
9
5
H
9
7
E
1
0
1
F
1
0
3
I
1
6
8
F
1
8
7
W
1
8
9
[1]1lr5.b none . . . . . . . . . . . . . Zn
[1]1lrh.b nla14 . . . . . . . . . . . . . Zn

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1 Me
I
6
0
L
6
3
W
8
2
Q
8
4
I
8
6
T
9
2
P
9
3
H
9
5
H
9
7
E
1
0
1
F
1
0
3
I
1
6
8
F
1
8
7
W
1
8
9
[1]1lr5.b . . . . . . . . . . . . . . Zn
[1]1lrh.b . . . . . . . . . . . . . . Zn

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1lr5.b is apo
1lrh.b:nla
[1] 1lr5.b
-
0.3
[1] 1lrh.b -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1lr5.b
1lrh.b
[1] 1lr5.b
0
.02
[1] 1lrh.b .02
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1lr5.b
1lrh.b
[1] 1lr5.b
0
0.3
[1] 1lrh.b 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1lr5.b
1lrh.b
[1] 1lr5.b
0
0.6
[1] 1lrh.b 0.6
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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